1JJ4	Transcription Dna	date	Jul 03, 2001
title	Human Papillomavirus Type 18 E2 Dna-Binding Domain Bound To Target
authors	S.S.Kim, J.K.Tam, A.F.Wang, R.S.Hegde
compound		source
Molecule: E2 Binding Site Dna Chain: C, D Engineered: Yes		Synthetic: Yes
Molecule: Regulatory Protein E2 Chain: A, B Fragment: Dna-Binding Domain Engineered: Yes		Organism_scientific: Human Papillomavirus Type 18 Organism_taxid: 333761 Gene: E2 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: C 2 2 21	R_factor 0.210 R_Free 0.287
crystal cell	length a length b length c angle alpha angle beta angle gamma 69.880 82.190 96.070 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
related structures	by homologous chain: 1F9F
Gene Ontology	Chain Function Process Component A, B
Primary reference	The structural basis of DNA target discrimination by papillomavirus E2 proteins., Kim SS, Tam JK, Wang AF, Hegde RS, J Biol Chem 2000 Oct 6;275(40):31245-54. PMID:10906136

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk] Biological Unit Coordinates (1jj4.pdb1.gz) 40 Kb CSU: Contacts of Structural Units for 1JJ4 Likely Quarternary Molecular Structure file(s) for 1JJ4 Retrieve 1JJ4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JJ4 from S2C, [Save to disk]

View 1JJ4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JJ4

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JJ4, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jj4a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1jj4b_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jj4_A] [1jj4] [1jj4_B] [1jj4_C] [1jj4_D] SWISS-PROT database: [P06790] Domain organization of [VE2_HPV18] by SWISSPFAM

Other resources with information on 1JJ4

Community annotation for 1JJ4 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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