1JJG Viral Protein date Jul 05, 2001
title Solution Structure Of Myxoma Virus Protein M156r
authors T.A.Ramelot, J.R.Cort, A.A.Yee, C.H.Arrowsmith, M.A.Kennedy, Nort Structural Genomics Consortium (Nesg)
compound source
Molecule: M156r
Chain: A
Engineered: Yes
 Organism_scientific: Myxoma Virus (Strain Lausanne)
Organism_taxid: 31530
Strain: Lausanne
Gene: M156r
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Lamdade3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
methodSolution NMR
Primary referenceMyxoma virus immunomodulatory protein M156R is a structural mimic of eukaryotic translation initiation factor eIF2alpha., Ramelot TA, Cort JR, Yee AA, Liu F, Goshe MB, Edwards AM, Smith RD, Arrowsmith CH, Dever TE, Kennedy MA, J Mol Biol 2002 Oct 4;322(5):943-54. PMID:12367520
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (565 Kb) [Save to disk]
  • Biological Unit Coordinates (1jjg.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 1JJG
  • Original NMR restraints for 1JJG from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1JJG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JJG from S2C, [Save to disk]
    • View 1JJG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JJG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JJG, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jjga_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jjg] [1jjg_A]
  • SWISS-PROT database: [Q9Q8E9]
  • Domain organization of [Q9Q8E9_9POXV] by SWISSPFAM
    • Other resources with information on 1JJG
  • Community annotation for 1JJG at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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