1JJJ Lipid Binding Protein date Jul 06, 2001
title Solution Structure Of Recombinant Human Epidermal-Type Fatty Binding Protein
authors L.H.Gutierrez-Gonzalez, C.Ludwig, C.Hohoff, M.Rademacher, T.Hanh H.Rueterjans, F.Spener, C.Luecke
compound source
Molecule: Epidermal-Type Fatty Acid Binding Protein (E-Fabp
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fabp5
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3d
methodSolution NMR
related structures by homologous chain: 1B56
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure and backbone dynamics of human epidermal-type fatty acid-binding protein (E-FABP)., Gutierrez-Gonzalez LH, Ludwig C, Hohoff C, Rademacher M, Hanhoff T, Ruterjans H, Spener F, Lucke C, Biochem J 2002 Jun 15;364(Pt 3):725-37. PMID:12049637
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (704 Kb) [Save to disk]
  • Biological Unit Coordinates (1jjj.pdb1.gz) 35 Kb
  • CSU: Contacts of Structural Units for 1JJJ
  • Retrieve 1JJJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JJJ from S2C, [Save to disk]
  • View 1JJJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JJJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JJJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jjja_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jjj_A] [1jjj]
  • SWISS-PROT database: [Q01469]
  • Belongs to the fatty acid binding protein (fabp) family according to TCDB.
  • Domain organization of [FABP5_HUMAN] by SWISSPFAM
  • Other resources with information on 1JJJ
  • Community annotation for 1JJJ at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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