1JKH Transferase date Jul 12, 2001
title Crystal Structure Of Y181c Mutant Hiv-1 Reverse Transcriptas Complex With Dmp-266(Efavirenz)
authors J.Ren, C.Nichols, L.Bird, P.Chamberlain, K.Weaver, S.Short, D.I.St D.K.Stammers
compound source
Molecule: Hiv-1 Rt, A-Chain
Chain: A
Fragment: P66
Ec: 2.7.7.49
Engineered: Yes
Other_details: Complexed With Dmp-266(Efavirenz)
Organism_scientific: Hiv-1 M:B_hxb2r
Organism_taxid: 11706
Strain: Hxb2 Isolate
Gene: Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Plasmid
Expression_system_plasmid: Pkk233-2

Molecule: Hiv-1 Rt, B-Chain
Chain: B
Fragment: P51
Ec: 2.7.7.49
Engineered: Yes

Organism_scientific: Hiv-1 M:B_hxb2r
Organism_taxid: 11706
Strain: Hxb2 Isolate
Gene: Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Plasmid
Expression_system_plasmid: Pkk233-2
symmetry Space Group: P 21 21 21
R_factor 0.236 R_Free 0.303
crystal
cell
length a length b length c angle alpha angle beta angle gamma
138.500 109.000 73.200 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand CSD, EFZ BindingDB enzyme Transferase E.C.2.7.7.49 BRENDA
related structures by homologous chain: 1C1C, 1EP4
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural mechanisms of drug resistance for mutations at codons 181 and 188 in HIV-1 reverse transcriptase and the improved resilience of second generation non-nucleoside inhibitors., Ren J, Nichols C, Bird L, Chamberlain P, Weaver K, Short S, Stuart DI, Stammers DK, J Mol Biol 2001 Sep 28;312(4):795-805. PMID:11575933
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk]
  • Biological Unit Coordinates (1jkh.pdb1.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 1JKH
  • CSU: Contacts of Structural Units for 1JKH
  • Likely Quarternary Molecular Structure file(s) for 1JKH
  • Structure Factors (314 Kb)
  • Retrieve 1JKH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JKH from S2C, [Save to disk]
  • Re-refined 1jkh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JKH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JKH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JKH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jkha2, region A:2-429 [Jmol] [rasmolscript] [script source]
        - Domain d1jkha1, region A:430-554 [Jmol] [rasmolscript] [script source]
        - Domain d1jkhb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1jkh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jkh_A] [1jkh_B] [1jkh]
  • SWISS-PROT database: [P04585]
  • Domain organization of [POL_HV1H2] by SWISSPFAM
  • Other resources with information on 1JKH
  • Community annotation for 1JKH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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