1JKH CRYSTAL STRUCTURE OF Y181C MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH DMP-266(EFAVIRENZ) date
authors Ren, J., Nichols, C., Bird, L., Chamberlain, P., Weaver, K., Short, S., Stuart, D.I., Stammers, D.K.
compound source
symmetry
R_factor
R_Free 0.303
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand CSD, EFZ BindingDB enzyme
related structures by homologous chain: 1C1C, 1EP4
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural mechanisms of drug resistance for mutations at codons 181 and 188 in HIV-1 reverse transcriptase and the improved resilience of second generation non-nucleoside inhibitors., Ren J, Nichols C, Bird L, Chamberlain P, Weaver K, Short S, Stuart DI, Stammers DK, J Mol Biol 2001 Sep 28;312(4):795-805. PMID:11575933
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (167 Kb) [Save to disk]
  • Biological Unit Coordinates (1jkh.pdb1.gz) 161 Kb
  • LPC: Ligand-Protein Contacts for 1JKH
  • CSU: Contacts of Structural Units for 1JKH
  • Likely Quarternary Molecular Structure file(s) for 1JKH
  • Structure Factors (314 Kb)
  • Retrieve 1JKH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JKH from S2C, [Save to disk]
  • Re-refined 1jkh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1JKH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JKH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JKH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jkha2, region A:2-429 [Jmol] [rasmolscript] [script source]
        - Domain d1jkha1, region A:430-554 [Jmol] [rasmolscript] [script source]
        - Domain d1jkhb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jkh_A] [1jkh_B] [1jkh]
  • SWISS-PROT database: [P04585]
  • Domain organization of [POL_HV1H2] by SWISSPFAM
    • Other resources with information on 1JKH
  • Community annotation for 1JKH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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