1JKK	Transferase	date	Jul 12, 2001
title	2.4a X-Ray Structure Of Ternary Complex Of A Catalytic Domai Death-Associated Protein Kinase With Atp Analogue And Mg.
authors	V.Tereshko, M.Teplova, J.Brunzelle, D.M.Watterson, M.Egli
compound		source
Molecule: Death-Associated Protein Kinase Chain: A Fragment: Catalytic Domain, Protein Kinase Domain Synonym: Dap Kinase 1 Ec: 2.7.1.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.204 R_Free 0.239
crystal cell	length a length b length c angle alpha angle beta angle gamma 46.630 62.430 88.670 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	ANP, MG	enzyme	Transferase E.C.2.7.1 BRENDA
related structures	by homologous chain: 1P4F
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structures of the catalytic domain of human protein kinase associated with apoptosis and tumor suppression., Tereshko V, Teplova M, Brunzelle J, Watterson DM, Egli M, Nat Struct Biol 2001 Oct;8(10):899-907. PMID:11573098

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (1jkk.pdb1.gz) 48 Kb LPC: Ligand-Protein Contacts for 1JKK CSU: Contacts of Structural Units for 1JKK Likely Quarternary Molecular Structure file(s) for 1JKK Structure Factors (83 Kb) Retrieve 1JKK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JKK from S2C, [Save to disk] Re-refined 1jkk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1JKK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JKK

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JKK, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jkka_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jkk_A] [1jkk] SWISS-PROT database: [P53355] Domain organization of [DAPK1_HUMAN] by SWISSPFAM Domain found in 1JKK: [S_TKc ] by SMART

Other resources with information on 1JKK

Community annotation for 1JKK at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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