1JKL Transferase date Jul 12, 2001
title 1.6a X-Ray Structure Of Binary Complex Of A Catalytic Domain Of Death-Associated Protein Kinase With Atp Analogue
authors V.Tereshko, M.Teplova, J.Brunzelle, D.M.Watterson, M.Egli
compound source
Molecule: Death-Associated Protein Kinase
Chain: A
Fragment: Catalytic Domain, Protein Kinase Domain
Synonym: Dap Kinase 1
Ec: 2.7.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.201 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.740 62.400 88.110 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.62 Å
ligand ANP enzyme Transferase E.C.2.7.1 BRENDA
related structures by homologous chain: 1IG1, 1JKS
Primary referenceCrystal structures of the catalytic domain of human protein kinase associated with apoptosis and tumor suppression., Tereshko V, Teplova M, Brunzelle J, Watterson DM, Egli M, Nat Struct Biol 2001 Oct;8(10):899-907. PMID:11573098
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (1jkl.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 1JKL
  • CSU: Contacts of Structural Units for 1JKL
  • Likely Quarternary Molecular Structure file(s) for 1JKL
  • Structure Factors (250 Kb)
  • Retrieve 1JKL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JKL from S2C, [Save to disk]
  • Re-refined 1jkl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JKL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JKL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JKL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jkla_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1jkl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jkl_A] [1jkl]
  • SWISS-PROT database: [P53355]
  • Domain organization of [DAPK1_HUMAN] by SWISSPFAM
  • Domain found in 1JKL: [S_TKc ] by SMART
  • Other resources with information on 1JKL
  • Community annotation for 1JKL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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