1JLJ Structural Protein date Jul 16, 2001
title 1.6 Angstrom Crystal Structure Of The Human Neuroreceptor Anchoring And Molybdenum Cofactor Biosynthesis Protein Gephyrin
authors G.Schwarz, N.Schrader, R.R.Mendel, H.J.Hecht, H.Schindelin
compound source
Molecule: Gephyrin
Chain: A, B, C
Fragment: Residues 1-181
Synonym: Putative Glycine Receptor-Tubulin Linker Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gephyrin
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dl41
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe60
symmetry Space Group: C 1 2 1
R_factor 0.147 R_Free 0.183
length a length b length c angle alpha angle beta angle gamma
114.269 66.008 73.122 90.00 93.27 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand FMT, NA enzyme
related structures by homologous chain: 1IHC
A, C, B

Primary referenceCrystal structures of human gephyrin and plant Cnx1 G domains: comparative analysis and functional implications., Schwarz G, Schrader N, Mendel RR, Hecht HJ, Schindelin H, J Mol Biol 2001 Sep14;312(2):405-18. PMID:11554796
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (1jlj.pdb1.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 1JLJ
  • CSU: Contacts of Structural Units for 1JLJ
  • Likely Quarternary Molecular Structure file(s) for 1JLJ
  • Retrieve 1JLJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JLJ from S2C, [Save to disk]
  • View 1JLJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JLJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JLJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jlja_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jljb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1jljc_, region C [Jmol] [rasmolscript] [script source]
  • Fold representative 1jlj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jlj] [1jlj_A] [1jlj_C] [1jlj_B]
  • SWISS-PROT database: [Q9NQX3]
  • Domain organization of [GEPH_HUMAN] by SWISSPFAM
  • Domain found in 1JLJ: [MoCF_biosynth ] by SMART
  • Other resources with information on 1JLJ
  • Community annotation for 1JLJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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