1JLM Cell Adhesion Protein date Apr 09, 1996
title I-Domain From Integrin Cr3, Mn2+ Bound
authors J.O.Lee, R.Liddington
compound source
Molecule: Integrin
Chain: A
Fragment: I-Domain
Synonym: Integrin Alpha-M
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pgex-2t
symmetry Space Group: C 1 2 1
R_factor 0.219 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.000 37.100 38.500 90.00 92.60 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand MN enzyme
related structures by homologous chain: 1IDO, 1M1U
Primary referenceTwo conformations of the integrin A-domain (I-domain): a pathway for activation?, Lee JO, Bankston LA, Arnaout MA, Liddington RC, Structure 1995 Dec 15;3(12):1333-40. PMID:8747460
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (1jlm.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 1JLM
  • CSU: Contacts of Structural Units for 1JLM
  • Likely Quarternary Molecular Structure file(s) for 1JLM
  • Structure Factors (99 Kb)
  • Retrieve 1JLM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JLM from S2C, [Save to disk]
  • Re-refined 1jlm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JLM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JLM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JLM, from MSDmotif at EBI
  • Genome occurence of 1JLM's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jlm__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1jlm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jlm_A] [1jlm]
  • SWISS-PROT database: [P11215]
  • Domain organization of [ITAM_HUMAN] by SWISSPFAM
  • Domain found in 1JLM: [VWA ] by SMART
  • Other resources with information on 1JLM
  • Community annotation for 1JLM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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