1JMT Rna Binding Protein date Jul 19, 2001
title X-Ray Structure Of A Core U2af65u2af35 Heterodimer
authors C.L.Kielkopf, N.A.Rodionova, M.R.Green, S.K.Burley
compound source
Molecule: Splicing Factor U2af 35 Kda Subunit
Chain: A
Synonym: U2 Snrnp Auxiliary Factor Small Subunit
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t2

Molecule: Splicing Factor U2af 65 Kda Subunit
Chain: B
Synonym: U2 Snrnp Auxiliary Factor Large Subunit
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t2
symmetry Space Group: P 2 2 2
R_factor 0.226 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.520 49.740 92.160 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand HEZ enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA novel peptide recognition mode revealed by the X-ray structure of a core U2AF35/U2AF65 heterodimer., Kielkopf CL, Rodionova NA, Green MR, Burley SK, Cell 2001 Sep 7;106(5):595-605. PMID:11551507
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (1jmt.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 1JMT
  • CSU: Contacts of Structural Units for 1JMT
  • Likely Quarternary Molecular Structure file(s) for 1JMT
  • Retrieve 1JMT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JMT from S2C, [Save to disk]
  • View 1JMT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JMT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JMT, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jmta_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1jmt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jmt] [1jmt_A] [1jmt_B]
  • SWISS-PROT database: [Q01081] [P26368]
  • Domain organization of [U2AF1_HUMAN] [U2AF2_HUMAN] by SWISSPFAM
  • Domain found in 1JMT: [RRM ] by SMART
  • Other resources with information on 1JMT
  • Community annotation for 1JMT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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