1JNH	Immune System	date	Jul 24, 2001
title	Crystal Structure Of Fab-Estradiol Complexes
authors	C.Monnet, F.Bettsworth, E.A.Stura, M.H.Le Du, R.Menez, L.Derrien Justin, B.Gilquin, G.Sibai, N.Battail-Poirot, M.Jolivet, A.Menez M.Arnaud, F.Ducancel, J.B.Charbonnier
compound		source
Molecule: Monoclonal Anti-Estradiol 10g6d6 Fab Light Chain Chain: A, C, E, G Synonym: Fab 10g6 Light Chain		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Other_details: Ascetic Fluid
Molecule: Monoclonal Anti-Estradiol 10g6d6 Fab Heavy Chain Chain: B, D, F, H Synonym: Fab 10g6 Heavy Chain		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Other_details: Ascetic Fluid
symmetry	Space Group: P 1 21 1	R_factor 0.198 R_Free 0.253
crystal cell	length a length b length c angle alpha angle beta angle gamma 70.200 192.900 71.120 90.00 92.93 90.00
method	X-Ray Diffraction	resolution	2.85 Å
ligand	ECO	enzyme
related structures	by homologous chain: 1F4Y, 1NCD, 1YUH, 2HMI
Gene Ontology	Chain Function Process Component A, C, G, E
Primary reference	Highly specific anti-estradiol antibodies: structural characterisation and binding diversity., Monnet C, Bettsworth F, Stura EA, Le Du MH, Menez R, Derrien L, Zinn-Justin S, Gilquin B, Sibai G, Battail-Poirot N, Jolivet M, Menez A, Arnaud M, Ducancel F, Charbonnier JB, J Mol Biol 2002 Jan 25;315(4):699-712. PMID:11812141

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (246 Kb) [Save to disk] Biological Unit Coordinates (1jnh.pdb1.gz) 64 Kb Biological Unit Coordinates (1jnh.pdb2.gz) 64 Kb Biological Unit Coordinates (1jnh.pdb3.gz) 65 Kb Biological Unit Coordinates (1jnh.pdb4.gz) 65 Kb LPC: Ligand-Protein Contacts for 1JNH CSU: Contacts of Structural Units for 1JNH Likely Quarternary Molecular Structure file(s) for 1JNH Structure Factors (786 Kb) Retrieve 1JNH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JNH from S2C, [Save to disk] Re-refined 1jnh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1JNH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JNH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JNH, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jnha1, region A:1-108 [Jmol] [rasmolscript] [script source]     - Domain d1jnha2, region A:112-211 [Jmol] [rasmolscript] [script source]     - Domain d1jnhb1, region B:1-117 [Jmol] [rasmolscript] [script source]     - Domain d1jnhb2, region B:121-217 [Jmol] [rasmolscript] [script source]     - Domain d1jnhc1, region C:1-108 [Jmol] [rasmolscript] [script source]     - Domain d1jnhc2, region C:112-211 [Jmol] [rasmolscript] [script source]     - Domain d1jnhd1, region D:1-117 [Jmol] [rasmolscript] [script source]     - Domain d1jnhd2, region D:121-217 [Jmol] [rasmolscript] [script source]     - Domain d1jnhe1, region E:1-108 [Jmol] [rasmolscript] [script source]     - Domain d1jnhe2, region E:112-211 [Jmol] [rasmolscript] [script source]     - Domain d1jnhf1, region F:1-117 [Jmol] [rasmolscript] [script source]     - Domain d1jnhf2, region F:121-217 [Jmol] [rasmolscript] [script source]     - Domain d1jnhg1, region G:1-108 [Jmol] [rasmolscript] [script source]     - Domain d1jnhg2, region G:112-211 [Jmol] [rasmolscript] [script source]     - Domain d1jnhh1, region H:1-117 [Jmol] [rasmolscript] [script source]     - Domain d1jnhh2, region H:121-217 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jnh_E] [1jnh] [1jnh_B] [1jnh_H] [1jnh_G] [1jnh_C] [1jnh_A] [1jnh_D] [1jnh_F] SWISS-PROT database: [P01843] Domain organization of [LAC1_MOUSE] by SWISSPFAM Domains found in 1JNH: [IG_like] [IGv ] by SMART

Other resources with information on 1JNH

Community annotation for 1JNH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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