1JOH THE STRUCTURE OF ANTIAMOEBIN I, A MEMBRANE-ACTIVE PEPTIDE date
authors Snook, C.F., Wallace, B.A.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.40
ligand ACE, AIB, DIV, HYP, MOH, PHL enzyme
Primary referenceThe structure and function of antiamoebin I, a proline-rich membrane-active polypeptide., Snook CF, Woolley GA, Oliva G, Pattabhi V, Wood SF, Blundell TL, Wallace BA, Structure 1998 Jun 15;6(6):783-92. PMID:9655831
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (12 Kb) [Save to disk]
  • Biological Unit Coordinates (1joh.pdb1.gz) 4 Kb
  • Biological Unit Coordinates (1joh.pdb2.gz) 4 Kb
  • LPC: Ligand-Protein Contacts for 1JOH
  • CSU: Contacts of Structural Units for 1JOH
  • Likely Quarternary Molecular Structure file(s) for 1JOH
  • Retrieve 1JOH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JOH from S2C, [Save to disk]
  • View 1JOH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JOH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1JOH 1JOHA 1JOHB from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JOH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1joh_B] [1joh] [1joh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1JOH
  • Community annotation for 1JOH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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