1JPX Viral Protein date Aug 03, 2001
title Mutation That Destabilize The Gp41 Core: Determinants For St The Sivcpmac Envelope Glycoprotein Complex. Wild Type.
authors J.Liu, S.Wang, C.C.Labranche, J.A.Hoxie, M.Lu
compound source
Molecule: Gp41 Envelope Protein
Chain: A, D, G
Fragment: N40(L6)C38
Synonym: Envelope Glycoprotein
Engineered: Yes
Organism_scientific: Simian Immunodeficiency Virus
Organism_taxid: 11723
Strain: Mac251
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
symmetry Space Group: P 63
R_factor 0.237 R_Free 0.283
length a length b length c angle alpha angle beta angle gamma
54.993 54.993 131.140 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
related structures by homologous chain: 2SIV
Primary referenceMutations that destabilize the gp41 core are determinants for stabilizing the simian immunodeficiency virus-CPmac envelope glycoprotein complex., Liu J, Wang S, Hoxie JA, LaBranche CC, Lu M, J Biol Chem 2002 Apr 12;277(15):12891-900. PMID:11830586
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (1jpx.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (1jpx.pdb2.gz) 29 Kb
  • Biological Unit Coordinates (1jpx.pdb3.gz) 28 Kb
  • CSU: Contacts of Structural Units for 1JPX
  • Likely Quarternary Molecular Structure file(s) for 1JPX
  • Retrieve 1JPX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JPX from S2C, [Save to disk]
  • View 1JPX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JPX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JPX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jpxa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jpxd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1jpxg_, region G [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jpx_A] [1jpx_D] [1jpx_G] [1jpx]
  • SWISS-PROT database: [Q87972]
  • Domain organization of [Q87972_SIVCZ] by SWISSPFAM
  • Other resources with information on 1JPX
  • Community annotation for 1JPX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science