1JPY Immune System date Aug 03, 2001
title Crystal Structure Of Il-17f
authors S.G.Hymowitz, E.H.Filvaroff, J.Yin, J.Lee, L.Cai, P.Risser, M.Maru W.Mao, J.Foster, R.Kelley, G.Pan, A.L.Gurney, A.M.De Vos, M.A.Sta
compound source
Molecule: Interleukin 17f
Chain: A, B, X, Y
Fragment: Secreted Il-17f
Synonym: Il-17f
Engineered: Yes
Other_details: The First Four Residues, Gshm, Are From The
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il-17f
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469
Expression_system_strain: Hi5 Cells
Expression_system_vector_type: Plasmid
symmetry Space Group: P 65
R_factor 0.238 R_Free 0.284
length a length b length c angle alpha angle beta angle gamma
126.438 126.438 89.914 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.85 Å
ligand NAG, NDG, SO4 enzyme
A, X, Y, B

Primary referenceIL-17s adopt a cystine knot fold: structure and activity of a novel cytokine, IL-17F, and implications for receptor binding., Hymowitz SG, Filvaroff EH, Yin JP, Lee J, Cai L, Risser P, Maruoka M, Mao W, Foster J, Kelley RF, Pan G, Gurney AL, de Vos AM, Starovasnik MA, EMBO J 2001 Oct 1;20(19):5332-41. PMID:11574464
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (1jpy.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (1jpy.pdb2.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 1JPY
  • CSU: Contacts of Structural Units for 1JPY
  • Likely Quarternary Molecular Structure file(s) for 1JPY
  • Structure Factors (143 Kb)
  • Retrieve 1JPY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JPY from S2C, [Save to disk]
  • Re-refined 1jpy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JPY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JPY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JPY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jpya_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jpyb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1jpyx_, region X [Jmol] [rasmolscript] [script source]
        - Domain d1jpyy_, region Y [Jmol] [rasmolscript] [script source]
  • Fold representative 1jpy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jpy] [1jpy_X] [1jpy_A] [1jpy_Y] [1jpy_B]
  • SWISS-PROT database: [Q96PD4]
  • Domain organization of [IL17F_HUMAN] by SWISSPFAM
  • Other resources with information on 1JPY
  • Community annotation for 1JPY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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