1JRM Structural Genomics, Unknown Function date Aug 14, 2001
title Nmr Structure Of Mth0637. Ontario Centre For Structural Prot Target Mth0637_1_104; Northeast Structural Genomics Target
authors A.Pineda-Lucena, Northeast Structural Genomics Consortium (Ne
compound source
Molecule: Conserved Hypothetical Protein Mth637
Chain: A
Synonym: Mth0637
Engineered: Yes
 Organism_scientific: Methanothermobacter Thermautotrophicus
Organism_taxid: 145262
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
note 1JRM is a representative structure
Primary referenceAn NMR approach to structural proteomics., Yee A, Chang X, Pineda-Lucena A, Wu B, Semesi A, Le B, Ramelot T, Lee GM, Bhattacharyya S, Gutierrez P, Denisov A, Lee CH, Cort JR, Kozlov G, Liao J, Finak G, Chen L, Wishart D, Lee W, McIntosh LP, Gehring K, Kennedy MA, Edwards AM, Arrowsmith CH, Proc Natl Acad Sci U S A 2002 Feb 19;99(4):1825-30. PMID:11854485
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (1jrm.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 1JRM
  • Original NMR restraints for 1JRM from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1JRM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JRM from S2C, [Save to disk]
    • View 1JRM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JRM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JRM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jrma_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jrm] [1jrm_A]
  • SWISS-PROT database: [O26734]
  • Domain organization of [Y637_METTH] by SWISSPFAM
  • Domain found in 1JRM: [DUF167 ] by SMART
    • Other resources with information on 1JRM
  • Community annotation for 1JRM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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