1JSP Dna Binding Protein date Aug 17, 2001
title Nmr Structure Of Cbp Bromodomain In Complex With P53 Peptide
authors Y.He, S.Mujtaba, L.Zeng, S.Yan, M.M.Zhou
compound source
Molecule: Tumor Protein P53
Chain: A
Fragment: C-Terminal Fragment
Engineered: Yes
 Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Humans.

Molecule: Creb-Binding Protein
Chain: B
Fragment: Bromodomain
Synonym: Cbp
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
methodSolution NMR
ligand ALY enzyme
note 1JSP (Molecule of the Month:pdb122)
Primary referenceStructural mechanism of the bromodomain of the coactivator CBP in p53 transcriptional activation., Mujtaba S, He Y, Zeng L, Yan S, Plotnikova O, Sachchidanand, Sanchez R, Zeleznik-Le NJ, Ronai Z, Zhou MM, Mol Cell. 2004 Jan 30;13(2):251-63. PMID:14759370
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (801 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1JSP
  • CSU: Contacts of Structural Units for 1JSP
  • Retrieve 1JSP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JSP from S2C, [Save to disk]
    • View 1JSP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 1JSP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JSP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jspb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1jsp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jsp_A] [1jsp_B]
  • SWISS-PROT database: [Q92793] [P04637]
  • Domain organization of [CBP_HUMAN] [P53_HUMAN] by SWISSPFAM
  • Domain found in 1JSP: [BROMO ] by SMART
  • Alignments of the sequence of 1JSP with the sequences similar proteins can be viewed for 1JSP's classification [CBP_HUMAN] [P53_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [CBP_HUMAN] [P53_HUMAN] at ProtoMap. Click on the Cluster number.
    • Other resources with information on 1JSP
  • Community annotation for 1JSP at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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