1JTI Allergen date Aug 21, 2001
title Loop-Inserted Structure Of P1-P1' Cleaved Ovalbumin Mutant R339t
authors M.Yamasaki, Y.Arii, B.Mikami, M.Hirose
compound source
Molecule: Ovalbumin
Chain: A, B
Engineered: Yes
Mutation: Yes
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Gene: Ovalbumin
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-Ova(R339t)
symmetry Space Group: P 1
R_factor 0.199 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.714 65.465 68.422 89.11 63.27 61.72
method X-Ray Diffractionresolution 2.30 Å
related structures by homologous chain: 1OVA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceLoop-inserted and thermostabilized structure of P1-P1' cleaved ovalbumin mutant R339T., Yamasaki M, Arii Y, Mikami B, Hirose M, J Mol Biol 2002 Jan 11;315(2):113-20. PMID:11779232
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk]
  • Biological Unit Coordinates (1jti.pdb1.gz) 62 Kb
  • Biological Unit Coordinates (1jti.pdb2.gz) 62 Kb
  • CSU: Contacts of Structural Units for 1JTI
  • Likely Quarternary Molecular Structure file(s) for 1JTI
  • Retrieve 1JTI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JTI from S2C, [Save to disk]
  • View 1JTI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JTI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JTI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jtia_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jtib_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jti_B] [1jti_A] [1jti]
  • SWISS-PROT database: [P01012]
  • Domain organization of [OVAL_CHICK] by SWISSPFAM
  • Domain found in 1JTI: [SERPIN ] by SMART
  • Other resources with information on 1JTI
  • Community annotation for 1JTI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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