1JTQ Transferase date Aug 21, 2001
title E. Coli Ts Complex With Dump And The Pyrrolo(2,3-D)Pyrimidin Antifolate Ly341770
authors P.H.Sayre, J.S.Finer-Moore, T.A.Fritz, D.Biermann, S.B.Gates, W.C.Mackellar, V.F.Patel, R.M.Stroud
compound source
Molecule: Thymidylate Synthase
Chain: A, B
Synonym: Ts
Ec: 2.1.1.45
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Thya
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: X2913
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pthya-Wt
symmetry Space Group: P 63
R_factor 0.181 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
127.800 127.800 68.100 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand CXM, LY3, UMP enzyme Transferase E.C.2.1.1.45 BRENDA
related structures by homologous chain: 1TLS, 1ZPR
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMulti-targeted antifolates aimed at avoiding drug resistance form covalent closed inhibitory complexes with human and Escherichia coli thymidylate synthases., Sayre PH, Finer-Moore JS, Fritz TA, Biermann D, Gates SB, MacKellar WC, Patel VF, Stroud RM, J Mol Biol 2001 Nov 2;313(4):813-29. PMID:11697906
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (1jtq.pdb1.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 1JTQ
  • CSU: Contacts of Structural Units for 1JTQ
  • Likely Quarternary Molecular Structure file(s) for 1JTQ
  • Structure Factors (164 Kb)
  • Retrieve 1JTQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JTQ from S2C, [Save to disk]
  • Re-refined 1jtq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JTQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JTQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JTQ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jtqa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jtqb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jtq] [1jtq_A] [1jtq_B]
  • SWISS-PROT database: [P0A884]
  • Domain organization of [TYSY_ECOLI] by SWISSPFAM
  • Other resources with information on 1JTQ
  • Community annotation for 1JTQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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