1JU5 Protein Binding Transferase date Aug 23, 2001
title Ternary Complex Of An Crk Sh2 Domain, Crk-Derived Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy
authors L.W.Donaldson, T.Pawson, L.E.Kay, J.D.Forman-Kay
compound source
Molecule: Crk
Chain: A
Fragment: Crk Sh2 Domain
Synonym: Proto-Oncogene C-Crk, Adapter Molecule Crk, P38
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2t

Molecule: Crk
Chain: B
Fragment: Crk Phosphopeptide
Synonym: Proto-Oncogene C-Crk, Adapter Molecule Crk, P38
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Paed4-Mmhb

Molecule: Abl
Chain: C
Fragment: Abl Sh3 Domain
Synonym: Proto-Oncogene Tyrosine-Protein Kinase
Ec: 2.7.1.112
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15
methodSolution NMR
ligand PTR enzyme Transferase E.C.2.7.1.112 BRENDA
related structures by homologous chain: 1ABQ, 1AWO
Gene
Ontology
ChainFunctionProcessComponent
C


Primary referenceStructure of a regulatory complex involving the Abl SH3 domain, the Crk SH2 domain, and a Crk-derived phosphopeptide., Donaldson LW, Gish G, Pawson T, Kay LE, Forman-Kay JD, Proc Natl Acad Sci U S A 2002 Oct 29;99(22):14053-8. Epub 2002 Oct 16. PMID:12384576
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1JU5
  • CSU: Contacts of Structural Units for 1JU5
  • Original NMR restraints for 1JU5 from PDB
  • Retrieve 1JU5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JU5 from S2C, [Save to disk]
  • View 1JU5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JU5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JU5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ju5a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ju5c_, region C [Jmol] [rasmolscript] [script source]
  • Fold representative 1ju5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ju5_B] [1ju5_C] [1ju5] [1ju5_A]
  • SWISS-PROT database: [P00519] [P46108] [Q64010]
  • Domain organization of [ABL1_HUMAN] [CRK_HUMAN] [CRK_MOUSE] by SWISSPFAM
  • Domains found in 1JU5: [SH2] [SH3 ] by SMART
  • Other resources with information on 1JU5
  • Community annotation for 1JU5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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