1JV2 Cell Adhesion date Aug 28, 2001
title Crystal Structure Of The Extracellular Segment Of Integrin A
authors J.P.Xiong, T.Stehle, B.Diefenbach, R.Zhang, R.Dunker, D.Scott, A.Joachimiak, S.L.Goodman, M.A.Arnaout
compound source
Molecule: Integrin, Alpha V
Chain: A
Fragment: Residues 31-987
Synonym: Vitronectin Receptor, Alpha Polypeptide, Antigen C
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: Platelet Membrane Glycoprotein Iiia Beta Subunit
Chain: B
Fragment: Residues 27-718
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 32 2 1
R_factor 0.255 R_Free 0.335
crystal
cell
length a length b length c angle alpha angle beta angle gamma
130.000 130.000 307.300 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.10 Å
ligand CA, NAG, NDG enzyme
note 1JV2 (Molecule of the Month:pdb134)
Gene
Ontology
ChainFunctionProcessComponent
A
  • positive regulation of cytos...

  • B
  • smooth muscle cell migration...

  • Primary referenceCrystal structure of the extracellular segment of integrin alpha Vbeta3., Xiong JP, Stehle T, Diefenbach B, Zhang R, Dunker R, Scott DL, Joachimiak A, Goodman SL, Arnaout MA, Science 2001 Oct 12;294(5541):339-45. PMID:11546839
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (248 Kb) [Save to disk]
  • Biological Unit Coordinates (1jv2.pdb1.gz) 238 Kb
  • LPC: Ligand-Protein Contacts for 1JV2
  • CSU: Contacts of Structural Units for 1JV2
  • Likely Quarternary Molecular Structure file(s) for 1JV2
  • Retrieve 1JV2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JV2 from S2C, [Save to disk]
  • View 1JV2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JV2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JV2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jv2a4, region A:1-438 [Jmol] [rasmolscript] [script source]
        - Domain d1jv2a1, region A:439-598 [Jmol] [rasmolscript] [script source]
        - Domain d1jv2a2, region A:599-737 [Jmol] [rasmolscript] [script source]
        - Domain d1jv2a3, region A:738-956 [Jmol] [rasmolscript] [script source]
        - Domain d1jv2b2, region B:107-354 [Jmol] [rasmolscript] [script source]
        - Domain d1jv2b4, region B:532-562 [Jmol] [rasmolscript] [script source]
        - Domain d1jv2b1, region B:55-106,B:355-434 [Jmol] [rasmolscript] [script source]
        - Domain d1jv2b5, region B:563-605 [Jmol] [rasmolscript] [script source]
        - Domain d1jv2b3, region B:606-690 [Jmol] [rasmolscript] [script source]
  • Fold representative 1jv2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jv2_A] [1jv2_B] [1jv2]
  • SWISS-PROT database: [P06756] [P05106]
  • Belongs to the integrin (integrin) family according to TCDB.
  • Domain organization of [ITAV_HUMAN] [ITB3_HUMAN] by SWISSPFAM
  • Domains found in 1JV2: [INB] [Int_alpha] [Integrin_B_tail] [PSI] [VWA ] by SMART
  • Other resources with information on 1JV2
  • Community annotation for 1JV2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1JV2 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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