1JW5 Sugar Binding Protein date Sep 02, 2001
title Structure Of Maltose Bound To Open-Form Maltodextrin-Binding In P1 Crystal
authors X.Duan, F.A.Quiocho
compound source
Molecule: Maltodextrin-Binding Protein
Chain: A
Synonym: Maltose-Binding Periplasmic Protein
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.195 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.900 44.600 58.100 100.60 101.00 103.70
method X-Ray Diffractionresolution 2.00 Å
ligand GLC enzyme
related structures by homologous chain: 1JW4, 1MPB
Gene
Ontology
ChainFunctionProcessComponent
A
  • carbohydrate transmembrane t...


    • Primary referenceStructural evidence for a dominant role of nonpolar interactions in the binding of a transport/chemosensory receptor to its highly polar ligands., Duan X, Quiocho FA, Biochemistry 2002 Jan 22;41(3):706-12. PMID:11790091
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (1jw5.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 1JW5
  • CSU: Contacts of Structural Units for 1JW5
  • Likely Quarternary Molecular Structure file(s) for 1JW5
  • Retrieve 1JW5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JW5 from S2C, [Save to disk]
    • View 1JW5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JW5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JW5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jw5a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jw5] [1jw5_A]
  • SWISS-PROT database: [P0AEX9]
  • Belongs to the atp-binding cassette (abc) superfamily according to TCDB.
  • Domain organization of [MALE_ECOLI] by SWISSPFAM
    • Other resources with information on 1JW5
  • Community annotation for 1JW5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1JW5 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science