1JYM date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CO, MSE enzyme
related structures by homologous chain: 1RQC
Primary referenceCrystals of peptide deformylase from Plasmodium falciparum reveal critical characteristics of the active site for drug design., Kumar A, Nguyen KT, Srivathsan S, Ornstein B, Turley S, Hirsh I, Pei D, Hol WG, Structure (Camb) 2002 Mar;10(3):357-67. PMID:12005434
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (299 Kb) [Save to disk]
  • Biological Unit Coordinates (1jym.pdb1.gz) 291 Kb
  • LPC: Ligand-Protein Contacts for 1JYM
  • CSU: Contacts of Structural Units for 1JYM
  • Likely Quarternary Molecular Structure file(s) for 1JYM
  • Structure Factors (566 Kb)
  • Retrieve 1JYM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JYM from S2C, [Save to disk]
  • Re-refined 1jym structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1JYM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jym] [1jym_A] [1jym_B] [1jym_C] [1jym_D] [1jym_E] [1jym_F] [1jym_G] [1jym_H] [1jym_I] [1jym_J]
  • SWISS-PROT database: [Q8I372]

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science