1K01 Ribosome date Sep 17, 2001
title Structural Basis For The Interaction Of Antibiotics With The Peptidyl Transferase Center In Eubacteria
authors F.Schluenzen, R.Zarivach, J.Harms, A.Bashan, A.Tocilj, R.Albrecht, A.Yonath, F.Franceschi
compound source
Molecule: 23s Rrna
Chain: A
Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L4
Chain: K

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L22
Chain: L

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L32
Chain: M
Synonym: 50s Ribosomal Protein L32

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299
symmetry Space Group: I 2 2 2
R_factor 0.275 R_Free 0.321
crystal
cell
length a length b length c angle alpha angle beta angle gamma
171.100 409.300 696.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.50 Å
ligand CLM, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
K


L


M


Primary referenceStructural basis for the interaction of antibiotics with the peptidyl transferase centre in eubacteria., Schlunzen F, Zarivach R, Harms J, Bashan A, Tocilj A, Albrecht R, Yonath A, Franceschi F, Nature 2001 Oct 25;413(6858):814-21. PMID:11677599
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1052 Kb) [Save to disk]
  • Biological Unit Coordinates (1k01.pdb1.gz) 1047 Kb
  • LPC: Ligand-Protein Contacts for 1K01
  • CSU: Contacts of Structural Units for 1K01
  • Likely Quarternary Molecular Structure file(s) for 1K01
  • Retrieve 1K01 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1K01 from S2C, [Save to disk]
  • View 1K01 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1K01
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1K01, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1k01a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1k01k_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1k01l_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1k01m_, region M [Jmol] [rasmolscript] [script source]
  • Fold representative 1k01 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1k01_M] [1k01] [1k01_L] [1k01_K] [1k01_A]
  • SWISS-PROT database: [Q9RXJ7] [P49228] [Q9RXK1]
  • Domain organization of [RL22_DEIRA] [RL32_DEIRA] [RL4_DEIRA] by SWISSPFAM
  • Other resources with information on 1K01
  • Community annotation for 1K01 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science