1K3V	Virus	date	Oct 04, 2001
title	Porcine Parvovirus Capsid
authors	A.A.Simpson, B.Hebert, G.M.Sullivan, C.R.Parrish, Z.Zadori, P.Tij M.G.Rossmann
compound		source
Molecule: Capsid Protein Vp2 Chain: A Synonym: Coat Protein Vp2 Engineered: Yes		Organism_scientific: Porcine Parvovirus Organism_taxid: 10796 Gene: Vp2 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_strain: High Five Expression_system_vector_type: Baculovirus Expression_system_vector: Pfastbac
symmetry	Space Group: P 21 21 2	R_factor 0.286 R_Free 0.283
crystal cell	length a length b length c angle alpha angle beta angle gamma 442.490 443.050 251.310 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.50 Å
Gene Ontology	Chain Function Process Component A
Primary reference	The structure of porcine parvovirus: comparison with related viruses., Simpson AA, Hebert B, Sullivan GM, Parrish CR, Zadori Z, Tijssen P, Rossmann MG, J Mol Biol 2002 Feb 1;315(5):1189-98. PMID:11827486

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk] Biological Unit Coordinates (1k3v.pdb1.gz) 5088 Kb CSU: Contacts of Structural Units for 1K3V Likely Quarternary Molecular Structure file(s) for 1K3V Retrieve 1K3V in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1K3V from S2C, [Save to disk]

View 1K3V in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1K3V

VIPERdb: visual, structural and computational analysis of 1K3V Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1K3V, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1k3va_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1k3v] [1k3v_A] SWISS-PROT database: [P18546] Domain organization of [COA1_PAVPN] by SWISSPFAM

Other resources with information on 1K3V

Community annotation for 1K3V at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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