1K40 Transferase date Oct 04, 2001
title Crystal Structure Of The Fat Domain Of Focal Adhesion Kinase
authors I.Hayashi, K.Vuori, R.C.Liddington
compound source
Molecule: Adhesion Kinase
Chain: A
Fragment: Fat Domain
Ec: 2.7.1.112
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: C 1 2 1
R_factor 0.236 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.104 40.163 52.008 90.00 103.82 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand
enzyme Transferase E.C.2.7.1.112 BRENDA
related structures by homologous chain: 1K04, 1OW6
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe focal adhesion targeting (FAT) region of focal adhesion kinase is a four-helix bundle that binds paxillin., Hayashi I, Vuori K, Liddington RC, Nat Struct Biol 2002 Feb;9(2):101-6. PMID:11799401
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (1k40.pdb1.gz) 20 Kb
  • CSU: Contacts of Structural Units for 1K40
  • Likely Quarternary Molecular Structure file(s) for 1K40
  • Structure Factors (49 Kb)
  • Retrieve 1K40 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1K40 from S2C, [Save to disk]
  • Re-refined 1k40 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1K40 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1K40
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1K40, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1k40a_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1k40_A] [1k40]
  • SWISS-PROT database: [P34152]
  • Domain organization of [FAK1_MOUSE] by SWISSPFAM
  • Other resources with information on 1K40
  • Community annotation for 1K40 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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