1K4R Virus date Oct 08, 2001
title Structure Of Dengue Virus
authors R.J.Kuhn, W.Zhang, M.G.Rossmann, S.V.Pletnev, J.Corver, E.Lenches C.T.Jones, S.Mukhopadhyay, P.R.Chipman, E.G.Strauss, T.S.Baker, J.H.Strauss
compound source
Molecule: Major Envelope Protein E
Chain: A, B, C
Fragment: Unp Residues 284-678
Organism_scientific: Chimeric Tick-Borne Encephalitis Virus Virus 4;
Organism_taxid: 638787
symmetry Space Group: P 1
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 24.00 Å
note 1K4R (Molecule of the Month:pdb103)
A, C, B

Primary referenceStructure of dengue virus: implications for flavivirus organization, maturation, and fusion., Kuhn RJ, Zhang W, Rossmann MG, Pletnev SV, Corver J, Lenches E, Jones CT, Mukhopadhyay S, Chipman PR, Strauss EG, Baker TS, Strauss JH, Cell 2002 Mar 8;108(5):717-25. PMID:11893341
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (189 Kb) [Save to disk]
  • Biological Unit Coordinates (1k4r.pdb1.gz) 10863 Kb
  • CSU: Contacts of Structural Units for 1K4R
  • Likely Quarternary Molecular Structure file(s) for 1K4R
  • Retrieve 1K4R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1K4R from S2C, [Save to disk]
  • View 1K4R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1K4R
  • VIPERdb: visual, structural and computational analysis of 1K4R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1K4R, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1k4ra_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1k4rb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1k4rc_, region C [Jmol] [rasmolscript] [script source]
  • Fold representative 1k4r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1k4r] [1k4r_A] [1k4r_B] [1k4r_C]
  • SWISS-PROT database: [C3V005] [P07720]
  • Domain organization of [C3V005_9FLAV] [POLG_TBEVS] by SWISSPFAM
  • Other resources with information on 1K4R
  • Community annotation for 1K4R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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