1K4U Hormone Growth Factor date Oct 08, 2001
title Solution Structure Of The C-Terminal Sh3 Domain Of P67phox Complexed With The C-Terminal Tail Region Of P47phox
authors K.Kami, R.Takeya, H.Sumimoto, D.Kohda
compound source
Molecule: Phagocyte Nadph Oxidase Subunit P67phox
Chain: S
Fragment: C-Terminal Sh3 Domain (Residues 455-516)
Synonym: Neutrophil Cytosol Factor 2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ncf2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2t

Molecule: Phagocyte Nadph Oxidase Subunit P47phox
Chain: P
Fragment: Tail Peptide (Residues 359-390)
Synonym: Neutrophil Cytosol Factor 1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ncf1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2t
methodSolution NMR
note 1K4U is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
P


Primary referenceDiverse recognition of non-PxxP peptide ligands by the SH3 domains from p67(phox), Grb2 and Pex13p., Kami K, Takeya R, Sumimoto H, Kohda D, EMBO J 2002 Aug 15;21(16):4268-76. PMID:12169629
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (545 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1K4U
  • Original NMR restraints for 1K4U from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1K4U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1K4U from S2C, [Save to disk]
  • View 1K4U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1K4U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1K4U, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1k4us_, region S [Jmol] [rasmolscript] [script source]
  • Fold representative 1k4u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1k4u_S] [1k4u_P] [1k4u]
  • SWISS-PROT database: [P14598] [P19878]
  • Domain organization of [NCF1_HUMAN] [NCF2_HUMAN] by SWISSPFAM
  • Domain found in 1K4U: [SH3 ] by SMART
  • Alignments of the sequence of 1K4U with the sequences similar proteins can be viewed for 1K4U's classification [NCF1_HUMAN] [NCF2_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [NCF1_HUMAN] [NCF2_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1K4U
  • Community annotation for 1K4U at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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