1K79 Transcription Dna date Oct 18, 2001
title Ets-1(331-440)+Ggaa Duplex
authors C.W.Garvie, J.Hagman, C.Wolberger
compound source
Molecule: Dna (5'- D(Tpapgptpgpcpcpgpgpapapaptpgpt)-3');
Chain: B, E
Engineered: Yes
Synthetic: Yes

Molecule: Dna (5'- D(Cpapcpaptptptpcpcpgpgpcpapcpt)-3');
Chain: C, F
Engineered: Yes

Synthetic: Yes

Molecule: C-Ets-1 Protein
Chain: A, D
Fragment: Ets Domain
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Ets-1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: C 1 2 1
R_factor 0.224 R_Free 0.279
length a length b length c angle alpha angle beta angle gamma
93.740 74.580 79.140 90.00 116.14 90.00
method X-Ray Diffractionresolution 2.40 Å
related structures by homologous chain: 1K78, 1K7A
A, D

Primary referenceStructural studies of Ets-1/Pax5 complex formation on DNA., Garvie CW, Hagman J, Wolberger C, Mol Cell 2001 Dec;8(6):1267-76. PMID:11779502
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (1k79.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (1k79.pdb2.gz) 32 Kb
  • CSU: Contacts of Structural Units for 1K79
  • Likely Quarternary Molecular Structure file(s) for 1K79
  • Structure Factors (198 Kb)
  • Retrieve 1K79 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1K79 from S2C, [Save to disk]
  • Re-refined 1k79 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1K79 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1K79
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1K79, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1k79a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1k79d_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1k79 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1k79_C] [1k79_F] [1k79] [1k79_E] [1k79_A] [1k79_D] [1k79_B]
  • SWISS-PROT database: [P27577]
  • Domain organization of [ETS1_MOUSE] by SWISSPFAM
  • Domain found in 1K79: [ETS ] by SMART
  • Other resources with information on 1K79
  • Community annotation for 1K79 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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