1K8F Unknown Function date Oct 24, 2001
title Crystal Structure Of The Human C-Terminal Cap1-Adenylyl Cycl Associated Protein
authors Y.V.Patskovsky, M.Chance, S.C.Almo, S.K.Burley, New York Sgx Res Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Adenylyl Cyclase-Associated Protein
Chain: A, B, C, D
Fragment: C-Terminal Domain
Synonym: Cap
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cap1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcrtopo-Nt
symmetry Space Group: P 21 21 21
R_factor 0.232 R_Free 0.268
length a length b length c angle alpha angle beta angle gamma
82.640 83.120 99.960 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
Primary referenceCrystal structure of the actin binding domain of the cyclase-associated protein., Dodatko T, Fedorov AA, Grynberg M, Patskovsky Y, Rozwarski DA, Jaroszewski L, Aronoff-Spencer E, Kondraskina E, Irving T, Godzik A, Almo SC, Biochemistry. 2004 Aug 24;43(33):10628-41. PMID:15311924
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (1k8f.pdb1.gz) 51 Kb
  • Biological Unit Coordinates (1k8f.pdb2.gz) 51 Kb
  • CSU: Contacts of Structural Units for 1K8F
  • Likely Quarternary Molecular Structure file(s) for 1K8F
  • Structure Factors (135 Kb)
  • Retrieve 1K8F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1K8F from S2C, [Save to disk]
  • Re-refined 1k8f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1K8F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1K8F
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1K8F, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1k8fa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1k8fb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1k8fc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1k8fd_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1k8f from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1k8f] [1k8f_B] [1k8f_D] [1k8f_A] [1k8f_C]
  • SWISS-PROT database: [Q01518]
  • Domain organization of [CAP1_HUMAN] by SWISSPFAM
  • Domain found in 1K8F: [CARP ] by SMART
  • Other resources with information on 1K8F
  • Community annotation for 1K8F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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