1KC8	Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit	date
authors	Hansen, J.L., Ban, N., Nissen, P., Moore, P.B., Steitz, T.A.
compound		source
symmetry		R_factor R_Free 0.235
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	3.01
ligand	BLS, CD, CL, K, MG, NA	enzyme
Gene Ontology	Chain Function Process Component 1 2 3 4 C D E F G H ribonuclease P activity I J K L M N O P Q R S T U V W X Y Z
Primary reference	Structures of five antibiotics bound at the peptidyl transferase center of the large ribosomal subunit., Hansen JL, Moore PB, Steitz TA, J Mol Biol 2003 Jul 25;330(5):1061-75. PMID:12860128

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1999 Kb) [Save to disk] Biological Unit Coordinates (1kc8.pdb1.gz) 1960 Kb LPC: Ligand-Protein Contacts for 1KC8 CSU: Contacts of Structural Units for 1KC8 Likely Quarternary Molecular Structure file(s) for 1KC8 Structure Factors (4898 Kb) Retrieve 1KC8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1KC8 from S2C, [Save to disk] Re-refined 1kc8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1KC8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1KC8

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1KC8, from MSDmotif at EBI Structure summary from SCOR (Structural Classification of RNA) Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1kc81_, region 1 [Jmol] [rasmolscript] [script source]     - Domain d1kc82_, region 2 [Jmol] [rasmolscript] [script source]     - Domain d1kc83_, region 3 [Jmol] [rasmolscript] [script source]     - Domain d1kc84_, region 4 [Jmol] [rasmolscript] [script source]     - Domain d1kc8c2, region C:1-90 [Jmol] [rasmolscript] [script source]     - Domain d1kc8c1, region C:91-237 [Jmol] [rasmolscript] [script source]     - Domain d1kc8d_, region D [Jmol] [rasmolscript] [script source]     - Domain d1kc8e_, region E [Jmol] [rasmolscript] [script source]     - Domain d1kc8f_, region F [Jmol] [rasmolscript] [script source]     - Domain d1kc8g1, region G:1-79 [Jmol] [rasmolscript] [script source]     - Domain d1kc8g2, region G:80-172 [Jmol] [rasmolscript] [script source]     - Domain d1kc8h_, region H [Jmol] [rasmolscript] [script source]     - Domain d1kc8i_, region I [Jmol] [rasmolscript] [script source]     - Domain d1kc8j_, region J [Jmol] [rasmolscript] [script source]     - Domain d1kc8k_, region K [Jmol] [rasmolscript] [script source]     - Domain d1kc8l_, region L [Jmol] [rasmolscript] [script source]     - Domain d1kc8m_, region M [Jmol] [rasmolscript] [script source]     - Domain d1kc8n_, region N [Jmol] [rasmolscript] [script source]     - Domain d1kc8o_, region O [Jmol] [rasmolscript] [script source]     - Domain d1kc8p_, region P [Jmol] [rasmolscript] [script source]     - Domain d1kc8q_, region Q [Jmol] [rasmolscript] [script source]     - Domain d1kc8r_, region R [Jmol] [rasmolscript] [script source]     - Domain d1kc8s_, region S [Jmol] [rasmolscript] [script source]     - Domain d1kc8t_, region T [Jmol] [rasmolscript] [script source]     - Domain d1kc8u_, region U [Jmol] [rasmolscript] [script source]     - Domain d1kc8v_, region V [Jmol] [rasmolscript] [script source]     - Domain d1kc8w_, region W [Jmol] [rasmolscript] [script source]     - Domain d1kc8x_, region X [Jmol] [rasmolscript] [script source]     - Domain d1kc8y_, region Y [Jmol] [rasmolscript] [script source]     - Domain d1kc8z_, region Z [Jmol] [rasmolscript] [script source] Fold representative 1kc8 from FSSP and Dali (Families of Structurally Similar Proteins) Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1kc8_4] [1kc8_Q] [1kc8_R] [1kc8_W] [1kc8_D] [1kc8] [1kc8_O] [1kc8_1] [1kc8_N] [1kc8_I] [1kc8_L] [1kc8_A] [1kc8_K] [1kc8_U] [1kc8_Y] [1kc8_J] [1kc8_C] [1kc8_3] [1kc8_T] [1kc8_Z] [1kc8_B] [1kc8_S] [1kc8_E] [1kc8_G] [1kc8_X] [1kc8_M] [1kc8_P] [1kc8_2] [1kc8_H] [1kc8_V] [1kc8_F] SWISS-PROT database: [P60617] [P29198] [P22450] [P60618] [P12737] [P12733] [P14123] [P14119] [P12734] [P10970] [P12732] [P14116] [P10972] [P10971] [P20276] [P14121] [P18138] [P12736] [P60619] [P32410] [P22452] [P20279] [P32411] [P12735] [P14124] [P14135] [P12743] [P15825] Domain organization of [RL10_HALMA] [RL13_HALMA] [RL14_HALMA] [RL15E_HALMA] [RL15_HALMA] [RL18E_HALMA] [RL18_HALMA] [RL19_HALMA] [RL21_HALMA] [RL22_HALMA] [RL23_HALMA] [RL24E_HALMA] [RL24_HALMA] [RL29_HALMA] [RL2_HALMA] [RL30_HALMA] [RL31_HALMA] [RL32_HALMA] [RL37A_HALMA] [RL37_HALMA] [RL39_HALMA] [RL3_HALMA] [RL44_HALMA] [RL4_HALMA] [RL5_HALMA] [RL6_HALMA] [RL7A_HALMA] [RLA0_HALMA] by SWISSPFAM Domains found in 1KC8: [HhH1] [KOW] [Ribosomal_L14] [Ribosomal_L15e] [Ribosomal_L19e] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_L31e] [Ribosomal_L32e] [TRASH ] by SMART

Other resources with information on 1KC8

Community annotation for 1KC8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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