1NKW Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans date
authors Harms, J.M., Schluenzen, F., Zarivach, R., Bashan, A., Gat, S., Agmon, I., Bartels, H., Franceschi, F., Yonath, A.
compound source
symmetry
R_factor
R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.10
note 1NKW supersedes 1LNR, 1KPJ, 1KC9
Gene
Ontology
ChainFunctionProcessComponent
1


2


3


4


A


B


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


U


W


X


Y


Z


Primary referenceHigh resolution structure of the large ribosomal subunit from a mesophilic eubacterium., Harms J, Schluenzen F, Zarivach R, Bashan A, Gat S, Agmon I, Bartels H, Franceschi F, Yonath A, Cell 2001 Nov 30;107(5):679-88. PMID:11733066
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1145 Kb) [Save to disk]
  • Biological Unit Coordinates (1nkw.pdb1.gz) 1136 Kb
  • CSU: Contacts of Structural Units for 1NKW
  • Likely Quarternary Molecular Structure file(s) for 1NKW
  • Retrieve 1NKW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NKW from S2C, [Save to disk]
    • View 1NKW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1NKW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NKW, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nkw0_, region 0 [Jmol] [rasmolscript] [script source]
        - Domain d1nkw1_, region 1 [Jmol] [rasmolscript] [script source]
        - Domain d1nkw2_, region 2 [Jmol] [rasmolscript] [script source]
        - Domain d1nkw3_, region 3 [Jmol] [rasmolscript] [script source]
        - Domain d1nkw4_, region 4 [Jmol] [rasmolscript] [script source]
        - Domain d1nkw9_, region 9 [Jmol] [rasmolscript] [script source]
        - Domain d1nkwa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1nkwb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1nkwc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1nkwd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1nkwe_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1nkwf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1nkwg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1nkwh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1nkwi_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1nkwj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1nkwk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1nkwl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1nkwm_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1nkwn_, region N [Jmol] [rasmolscript] [script source]
        - Domain d1nkwo_, region O [Jmol] [rasmolscript] [script source]
        - Domain d1nkwp_, region P [Jmol] [rasmolscript] [script source]
        - Domain d1nkwq_, region Q [Jmol] [rasmolscript] [script source]
        - Domain d1nkwr_, region R [Jmol] [rasmolscript] [script source]
        - Domain d1nkws_, region S [Jmol] [rasmolscript] [script source]
        - Domain d1nkwt_, region T [Jmol] [rasmolscript] [script source]
        - Domain d1nkwu_, region U [Jmol] [rasmolscript] [script source]
        - Domain d1nkww_, region W [Jmol] [rasmolscript] [script source]
        - Domain d1nkwx_, region X [Jmol] [rasmolscript] [script source]
        - Domain d1nkwy_, region Y [Jmol] [rasmolscript] [script source]
        - Domain d1nkwz_, region Z [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nkw_D] [1nkw_R] [1nkw_I] [1nkw_A] [1nkw_C] [1nkw_L] [1nkw_U] [1nkw_K] [1nkw_Y] [1nkw_T] [1nkw_P] [1nkw_J] [1nkw_9] [1nkw_Q] [1nkw_B] [1nkw_F] [1nkw_2] [1nkw_S] [1nkw_X] [1nkw_O] [1nkw_0] [1nkw_H] [1nkw_W] [1nkw] [1nkw_N] [1nkw_Z] [1nkw_M] [1nkw_G] [1nkw_3] [1nkw_E] [1nkw_4] [1nkw_1]
  • SWISS-PROT database: [Q9RSS7] [Q9RXY1] [Q9RXJ2] [Q9RSK9] [Q9RXJ5] [Q9RSJ5] [Q9RSL2] [Q9RWB4] [Q9RSW7] [Q9RY64] [Q9RXJ7] [Q9RXK0] [Q9RXJ1] [Q9RX88] [Q9RY65] [Q9RXJ4] [Q9RXJ9] [Q9RSL0] [Q9RW44] [P49228] [Q9RSS4] [Q9RSH2] [Q9RSW6] [Q9RSK0] [Q9RXK2] [Q9RXK1] [Q9RXJ0] [Q9RSL3] [Q9RY49]
  • Domain organization of [RL11_DEIRA] [RL13_DEIRA] [RL14_DEIRA] [RL15_DEIRA] [RL16_DEIRA] [RL17_DEIRA] [RL18_DEIRA] [RL19_DEIRA] [RL20_DEIRA] [RL21_DEIRA] [RL22_DEIRA] [RL23_DEIRA] [RL24_DEIRA] [RL25_DEIRA] [RL27_DEIRA] [RL29_DEIRA] [RL2_DEIRA] [RL30_DEIRA] [RL31_DEIRA] [RL32_DEIRA] [RL33_DEIRA] [RL34_DEIRA] [RL35_DEIRA] [RL36_DEIRA] [RL3_DEIRA] [RL4_DEIRA] [RL5_DEIRA] [RL6_DEIRA] [RL9_DEIRA] by SWISSPFAM
  • Domains found in 1NKW: [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C ] by SMART
    • Other resources with information on 1NKW
  • Community annotation for 1NKW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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