1KCX Signaling Protein date Nov 11, 2001
title X-Ray Structure Of Nysgrc Target T-45
authors R.C.Deo, E.F.Schmidt, S.M.Strittmatter, S.K.Burley, New York Sgx Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Dihydropyrimidinase Related Protein-1
Chain: A, B
Fragment: Residues 8-525
Synonym: Drp-1, Crmp-1
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Crmp1 (8-525)
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Ut5600
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p1
symmetry Space Group: C 2 2 21
R_factor 0.204 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
123.396 152.111 157.165 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.12 Å
related structures by homologous chain: 1N0W
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural bases for CRMP function in plexin-dependent semaphorin3A signaling., Deo RC, Schmidt EF, Elhabazi A, Togashi H, Burley SK, Strittmatter SM, EMBO J 2004 Jan 14;23(1):9-22. Epub 2003 Dec 18. PMID:14685275
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (167 Kb) [Save to disk]
  • Biological Unit Coordinates (1kcx.pdb1.gz) 162 Kb
  • CSU: Contacts of Structural Units for 1KCX
  • Likely Quarternary Molecular Structure file(s) for 1KCX
  • Retrieve 1KCX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KCX from S2C, [Save to disk]
  • View 1KCX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KCX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1KCX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1kcxa1, region A:15-66,A:401-490 [Jmol] [rasmolscript] [script source]
        - Domain d1kcxa2, region A:67-400 [Jmol] [rasmolscript] [script source]
        - Domain d1kcxb1, region B:15-66,B:401-490 [Jmol] [rasmolscript] [script source]
        - Domain d1kcxb2, region B:67-400 [Jmol] [rasmolscript] [script source]
  • Fold representative 1kcx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kcx_B] [1kcx_A] [1kcx]
  • SWISS-PROT database: [P97427]
  • Domain organization of [DPYL1_MOUSE] by SWISSPFAM
  • Other resources with information on 1KCX
  • Community annotation for 1KCX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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