1KDL date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Primary referenceConformational analysis by CD and NMR spectroscopy of a peptide encompassing the amphipathic domain of YopD from Yersinia., Tengel T, Sethson I, Francis MS, Eur J Biochem 2002 Aug;269(15):3659-68. PMID:12153562
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (9 Kb) [Save to disk]
  • Biological Unit Coordinates (1kdl.pdb1.gz) 6 Kb
  • CSU: Contacts of Structural Units for 1KDL
  • Original NMR restraints for 1KDL from PDB
  • Retrieve 1KDL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KDL from S2C, [Save to disk]
    • View 1KDL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kdl] [1kdl_A]
  • SWISS-PROT database: [Q06131]
  • Belongs to the bacterial type iii-target cell pore (iiitcp) family according to TCDB.

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