1KE7 Transferase date Nov 14, 2001
title Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[(2,2-Dio Dihydro-2-Benzothien-5-Yl)Amino]Methylene}-5-(1,3-Oxazol-5- Dihydro-2h-Indol-2-One
authors H.N.Bramson, J.Corona, S.T.Davis, S.H.Dickerson, M.Edelstein, S.V R.T.Gampe, A.H.Hassell, L.M.Shewchuk, L.F.Kuyper
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Synonym: Cdk2, P33 Protein Kinase
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pfastbac
symmetry Space Group: P 21 21 21
R_factor 0.191 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.760 73.780 54.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand LS3 enzyme Transferase E.C.2.7.1.37 BRENDA
related structures by homologous chain: 1KE6, 1Y8Y
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceOxindole-based inhibitors of cyclin-dependent kinase 2 (CDK2): design, synthesis, enzymatic activities, and X-ray crystallographic analysis., Bramson HN, Corona J, Davis ST, Dickerson SH, Edelstein M, Frye SV, Gampe RT Jr, Harris PA, Hassell A, Holmes WD, Hunter RN, Lackey KE, Lovejoy B, Luzzio MJ, Montana V, Rocque WJ, Rusnak D, Shewchuk L, Veal JM, Walker DH, Kuyper LF, J Med Chem 2001 Dec 6;44(25):4339-58. PMID:11728181
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (1ke7.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 1KE7
  • CSU: Contacts of Structural Units for 1KE7
  • Likely Quarternary Molecular Structure file(s) for 1KE7
  • Structure Factors (117 Kb)
  • Retrieve 1KE7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KE7 from S2C, [Save to disk]
  • Re-refined 1ke7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1KE7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KE7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KE7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ke7a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ke7_A] [1ke7]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 1KE7: [S_TKc ] by SMART
  • Other resources with information on 1KE7
  • Community annotation for 1KE7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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