1KEU Lyase date Nov 17, 2001
title The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rml Salmonella Enterica Serovar Typhimurium With Dtdp-D-Glucose
authors S.T.M.Allard, K.Beis, M.F.Giraud, A.D.Hegeman, J.W.Gross, C.Whit M.Graninger, P.Messner, A.G.Allen, J.H.Naismith
compound source
Molecule: Dtdp-D-Glucose 4,6-Dehydratase
Chain: A, B
Synonym: Dtdp-Glucose 4,6-Dehydratase; Rmlb
Ec: 4.2.1.46
Engineered: Yes
Organism_scientific: Salmonella Enterica Subsp. Enterica Se Typhimurium;
Organism_taxid: 90371
Strain: Subsp. Enterica Serovar Typhimurium
Gene: Rmlb
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 61
R_factor 0.197 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
171.859 171.859 94.287 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand DAU, NAD enzyme Lyase E.C.4.2.1.46 BRENDA
related structures by homologous chain: 1BXK, 1G1A
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceToward a structural understanding of the dehydratase mechanism., Allard ST, Beis K, Giraud MF, Hegeman AD, Gross JW, Wilmouth RC, Whitfield C, Graninger M, Messner P, Allen AG, Maskell DJ, Naismith JH, Structure (Camb) 2002 Jan;10(1):81-92. PMID:11796113
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk]
  • Biological Unit Coordinates (1keu.pdb1.gz) 129 Kb
  • LPC: Ligand-Protein Contacts for 1KEU
  • CSU: Contacts of Structural Units for 1KEU
  • Likely Quarternary Molecular Structure file(s) for 1KEU
  • Retrieve 1KEU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KEU from S2C, [Save to disk]
  • View 1KEU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KEU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KEU, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1keua_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1keub_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1keu_A] [1keu] [1keu_B]
  • SWISS-PROT database: [P26391]
  • Domain organization of [RFBB_SALTY] by SWISSPFAM
  • Other resources with information on 1KEU
  • Community annotation for 1KEU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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