1KEV Oxidoreductase date Oct 21, 1996
title Structure Of Nadp-Dependent Alcohol Dehydrogenase
authors Y.Korkhin, F.Frolow
compound source
Molecule: Nadp-Dependent Alcohol Dehydrogenase
Chain: A, B, C, D
Ec: 1.1.1.2
Engineered: Yes
Other_details: Holo-Enzyme Form
 Organism_scientific: Clostridium Beijerinckii
Organism_taxid: 1520
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Bacterium
symmetry Space Group: P 21 21 21
R_factor 0.205 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.450 151.420 127.870 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand NDP, ZN enzyme Oxidoreductase E.C.1.1.1.2 BRENDA
related structures by homologous chain: 1JQB, 1PED
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystalline alcohol dehydrogenases from the mesophilic bacterium Clostridium beijerinckii and the thermophilic bacterium Thermoanaerobium brockii: preparation, characterization and molecular symmetry., Korkhin Y, Frolow F, Bogin O, Peretz M, Kalb AJ, Burstein Y, Acta Crystallogr D Biol Crystallogr. 1996 Jul 1;52(Pt 4):882-6. PMID:15299659
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (232 Kb) [Save to disk]
  • Biological Unit Coordinates (1kev.pdb1.gz) 226 Kb
  • LPC: Ligand-Protein Contacts for 1KEV
  • CSU: Contacts of Structural Units for 1KEV
  • Likely Quarternary Molecular Structure file(s) for 1KEV
  • Retrieve 1KEV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KEV from S2C, [Save to disk]
    • View 1KEV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1KEV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KEV, from MSDmotif at EBI
  • Genome occurence of 1KEV's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1keva1, region A:1-139,A:314-351 [Jmol] [rasmolscript] [script source]
        - Domain d1keva2, region A:140-313 [Jmol] [rasmolscript] [script source]
        - Domain d1kevb1, region B:1-139,B:314-351 [Jmol] [rasmolscript] [script source]
        - Domain d1kevb2, region B:140-313 [Jmol] [rasmolscript] [script source]
        - Domain d1kevc1, region C:1-139,C:314-351 [Jmol] [rasmolscript] [script source]
        - Domain d1kevc2, region C:140-313 [Jmol] [rasmolscript] [script source]
        - Domain d1kevd1, region D:1-139,D:314-351 [Jmol] [rasmolscript] [script source]
        - Domain d1kevd2, region D:140-313 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kev_A] [1kev_D] [1kev_B] [1kev] [1kev_C]
  • SWISS-PROT database: [P25984]
  • Domain organization of [ADH_CLOBE] by SWISSPFAM
    • Other resources with information on 1KEV
  • Community annotation for 1KEV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1KEV from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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