1KFZ Solution Structure of C-terminal Sem-5 SH3 Domain (Ensemble of 16 Structures) date
authors Ferreon, J.C., Volk, D.E., Luxon, B.A., Gorenstein, D., Hilser, V.J.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 16 Modelsresolution
related structures by homologous chain: 1K76
Primary referenceSolution structure, dynamics, and thermodynamics of the native state ensemble of the Sem-5 C-terminal SH3 domain., Ferreon JC, Volk DE, Luxon BA, Gorenstein DG, Hilser VJ, Biochemistry 2003 May 20;42(19):5582-91. PMID:12741814
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (266 Kb) [Save to disk]
  • Biological Unit Coordinates (1kfz.pdb1.gz) 17 Kb
  • CSU: Contacts of Structural Units for 1KFZ
  • Retrieve 1KFZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KFZ from S2C, [Save to disk]
  • View 1KFZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KFZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KFZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1kfza_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kfz_A] [1kfz]
  • SWISS-PROT database: [P29355]
  • Domain organization of [SEM5_CAEEL] by SWISSPFAM
  • Domain found in 1KFZ: [SH3 ] by SMART
  • Other resources with information on 1KFZ
  • Community annotation for 1KFZ at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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