1KHM Rna Binding Protein date Jan 07, 1999
title C-Terminal Kh Domain Of Hnrnp K (Kh3)
authors J.Baber, D.Libutti, D.Levens, N.Tjandra
compound source
Molecule: Protein (Hnrnp K)
Chain: A
Fragment: C-Terminal Kh Domain, Residues 379-463 Of Full Le K;
Synonym: Kh3
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pgex-4t-3
methodSolution NMR
related structures by homologous chain: 1J5K
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHigh precision solution structure of the C-terminal KH domain of heterogeneous nuclear ribonucleoprotein K, a c-myc transcription factor., Baber JL, Libutti D, Levens D, Tjandra N, J Mol Biol 1999 Jun 18;289(4):949-62. PMID:10369774
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (446 Kb) [Save to disk]
  • Biological Unit Coordinates (1khm.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 1KHM
  • Original NMR restraints for 1KHM from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1KHM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KHM from S2C, [Save to disk]
  • View 1KHM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KHM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KHM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1khma_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1khm_A] [1khm]
  • SWISS-PROT database: [P61978]
  • Domain organization of [HNRPK_HUMAN] by SWISSPFAM
  • Domain found in 1KHM: [KH ] by SMART
  • Other resources with information on 1KHM
  • Community annotation for 1KHM at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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