1KIK Transferase date Dec 03, 2001
title Sh3 Domain Of Lymphocyte Specific Kinase (Lck)
authors L.Briese, D.Willbold
compound source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Lck
Chain: A
Fragment: Sh3 Domain (Residues 64-120)
Synonym: P56-Lck, Lsk, T Cell-Specific Protein-Tyrosine Kin
Ec: 2.7.1.112
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-2
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.1.112 BRENDA
related structures by homologous chain: 1H92
Primary referenceStructure determination of human Lck unique and SH3 domains by nuclear magnetic resonance spectroscopy., Briese L, Willbold D, BMC Struct Biol 2003 May 7;3(1):3. PMID:12734017
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (370 Kb) [Save to disk]
  • Biological Unit Coordinates (1kik.pdb1.gz) 15 Kb
  • CSU: Contacts of Structural Units for 1KIK
  • Original NMR restraints for 1KIK from PDB
  • Retrieve 1KIK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KIK from S2C, [Save to disk]
  • View 1KIK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KIK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KIK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1kika_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kik_A] [1kik]
  • SWISS-PROT database: [P06239]
  • Domain organization of [LCK_HUMAN] by SWISSPFAM
  • Domain found in 1KIK: [SH3 ] by SMART
  • Other resources with information on 1KIK
  • Community annotation for 1KIK at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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