1KOJ Isomerase date Dec 20, 2001
title Crystal Structure Of Rabbit Phosphoglucose Isomerase Complexed With 5-Phospho-D-Arabinonohydroxamic Acid
authors D.Arsenieva, R.Hardre, L.Salmon, C.J.Jeffery
compound source
Molecule: Glucose-6-Phosphate Isomerase
Chain: A, B
Synonym: Gpi; Phosphoglucose Isomerase; Pgi; Phosphohexose Isomerase; Phi;
Ec: 5.3.1.9
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Tissue: Skeletal Muscle
Cellular_location: Cytoplasmic
symmetry Space Group: C 2 2 21
R_factor 0.220 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.690 115.970 271.850 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand PAN BindingDB enzyme Isomerase E.C.5.3.1.9 BRENDA
related structures by homologous chain: 1G98, 1XTB
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • cytokine activity


  • Primary referenceThe crystal structure of rabbit phosphoglucose isomerase complexed with 5-phospho-D-arabinonohydroxamic acid., Arsenieva D, Hardre R, Salmon L, Jeffery CJ, Proc Natl Acad Sci U S A 2002 Apr 30;99(9):5872-7. PMID:11983887
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (200 Kb) [Save to disk]
  • Biological Unit Coordinates (1koj.pdb1.gz) 195 Kb
  • LPC: Ligand-Protein Contacts for 1KOJ
  • CSU: Contacts of Structural Units for 1KOJ
  • Likely Quarternary Molecular Structure file(s) for 1KOJ
  • Structure Factors (801 Kb)
  • Retrieve 1KOJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KOJ from S2C, [Save to disk]
  • Re-refined 1koj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1KOJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KOJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1KOJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1koja_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1kojb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1koj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1koj_A] [1koj_B] [1koj]
  • SWISS-PROT database: [Q9N1E2]
  • Domain organization of [G6PI_RABIT] by SWISSPFAM
  • Other resources with information on 1KOJ
  • Community annotation for 1KOJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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