1KOT Transport Protein date Dec 22, 2001
title Solution Structure Of Human Gaba Receptor Associated Protein Gabarap
authors T.Stangler, C.Luge, L.M.Mayr, D.Willbold
compound source
Molecule: Gabarap
Chain: A
Synonym: Gaba-A Receptor-Associated Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-Gabarap
methodSolution NMR
related structures by homologous chain: 1KM7
Gene
Ontology
ChainFunctionProcessComponent
A
  • chemical synaptic transmissi...

  • Primary referenceSolution structure of human GABA(A) receptor-associated protein GABARAP: implications for biolgoical funcrion and its regulation., Stangler T, Mayr LM, Willbold D, J Biol Chem. 2002 Apr 19;277(16):13363-6. Epub 2002 Mar 1. PMID:11875056
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (504 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1KOT
  • Original NMR restraints for 1KOT from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1KOT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KOT from S2C, [Save to disk]
  • View 1KOT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KOT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1KOT, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1kota_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1kot from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kot] [1kot_A]
  • SWISS-PROT database: [O95166]
  • Belongs to the neurotransmitter receptor, cys loop, ligand-gated ion channel (lic) family according to TCDB.
  • Domain organization of [GBRAP_HUMAN] by SWISSPFAM
  • Other resources with information on 1KOT
  • Community annotation for 1KOT at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1KOT from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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