1KQO Transferase date Jan 07, 2002
title Crystal Structure Of Nmnnamn Adenylyltransferase Complexed Deamido-Nad
authors T.Zhou, O.Kurnasov, D.R.Tomchick, D.D.Binns, N.V.Grishin, V.E.Mar A.L.Osterman, H.Zhang
compound source
Molecule: Nicotinamide Mononucleotide Adenylyl Transferase
Chain: A, B, C, D, E, F
Synonym: Nmnat
Ec: 2.7.7.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.210 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
131.245 90.391 137.673 90.00 117.17 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand DND enzyme Transferase E.C.2.7.7.1 BRENDA
related structures by homologous chain: 1KKU, 1KR2
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B
  • nicotinate-nucleotide adenyl...


    • Primary referenceStructure of human nicotinamide/nicotinic acid mononucleotide adenylyltransferase. Basis for the dual substrate specificity and activation of the oncolytic agent tiazofurin., Zhou T, Kurnasov O, Tomchick DR, Binns DD, Grishin NV, Marquez VE, Osterman AL, Zhang H, J Biol Chem 2002 Apr 12;277(15):13148-54. Epub 2002 Jan 11. PMID:11788603
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (242 Kb) [Save to disk]
  • Biological Unit Coordinates (1kqo.pdb1.gz) 235 Kb
  • LPC: Ligand-Protein Contacts for 1KQO
  • CSU: Contacts of Structural Units for 1KQO
  • Likely Quarternary Molecular Structure file(s) for 1KQO
  • Retrieve 1KQO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KQO from S2C, [Save to disk]
    • View 1KQO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1KQO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KQO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1kqoa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1kqob_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1kqoc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1kqod_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1kqoe_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1kqof_, region F [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kqo_A] [1kqo] [1kqo_D] [1kqo_E] [1kqo_B] [1kqo_C] [1kqo_F]
  • SWISS-PROT database: [Q9HAN9]
  • Domain organization of [NMNA1_HUMAN] by SWISSPFAM
    • Other resources with information on 1KQO
  • Community annotation for 1KQO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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