1KS0 Hydrolase date Jan 10, 2002
title The First Fibronectin Type II Module From Human Matrix Metalloproteinase 2
authors M.Gehrmann, K.Briknarova, L.Banyai, L.Patthy, M.Llinas
compound source
Molecule: Matrix Metalloproteinase 2
Chain: A
Fragment: First Fibronectin Type II Module
Synonym: 72 Kda Type Iv Collagenase, Mmp-2
Ec: 3.4.24.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.4.24.24 BRENDA
related structures by homologous chain: 1CK7
Primary referenceThe col-1 module of human matrix metalloproteinase-2 (MMP-2): structural/functional relatedness between gelatin-binding fibronectin type II modules and lysine-binding kringle domains., Gehrmann M, Briknarova K, Banyai L, Patthy L, Llinas M, Biol Chem 2002 Jan;383(1):137-48. PMID:11928808
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (752 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1KS0
  • Original NMR restraints for 1KS0 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1KS0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KS0 from S2C, [Save to disk]
  • View 1KS0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KS0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1KS0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ks0a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1ks0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ks0] [1ks0_A]
  • SWISS-PROT database: [P08253]
  • Domain organization of [MMP2_HUMAN] by SWISSPFAM
  • Domain found in 1KS0: [FN2 ] by SMART
  • Other resources with information on 1KS0
  • Community annotation for 1KS0 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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