1KSG Signaling Protein Hydrolase date Jan 13, 2002
title Complex Of Arl2 And Pde Delta, Crystal Form 1
authors M.Hanzal-Bayer, L.Renault, P.Roversi, A.Wittinghofer, R.C.Hillig
compound source
Molecule: Arf-Like Protein 2
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Arl2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex Kg

Molecule: Retinal Rod Rhodopsin-Sensitive Cgmp 3',5'-Cyclic Phosphodiesterase Delta-Subunit;
Chain: B
Synonym: Gmp-Pde Delta, P17 Protein
Ec: 3.1.4.17
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pde6d Or Pded
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1 21 1
R_factor 0.255 R_Free 0.301
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.100 45.700 74.700 90.00 94.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand GTP, MG enzyme Hydrolase E.C.3.1.4.17 BRENDA
related structures by homologous chain: 1KSH, 1KSJ
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • GTPase inhibitor activity


  • Primary referenceThe complex of Arl2-GTP and PDE delta: from structure to function., Hanzal-Bayer M, Renault L, Roversi P, Wittinghofer A, Hillig RC, EMBO J 2002 May 1;21(9):2095-106. PMID:11980706
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (1ksg.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 1KSG
  • CSU: Contacts of Structural Units for 1KSG
  • Likely Quarternary Molecular Structure file(s) for 1KSG
  • Structure Factors (112 Kb)
  • Retrieve 1KSG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KSG from S2C, [Save to disk]
  • Re-refined 1ksg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1KSG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KSG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KSG, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ksga_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ksgb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ksg_B] [1ksg_A] [1ksg]
  • SWISS-PROT database: [Q9D0J4] [O43924]
  • Domain organization of [ARL2_MOUSE] [PDE6D_HUMAN] by SWISSPFAM
  • Domain found in 1KSG: [ARF ] by SMART
  • Other resources with information on 1KSG
  • Community annotation for 1KSG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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