1KZO Transferase Transferase Substrate date Feb 07, 2002
title Protein Farnesyltransferase Complexed With Farnesylated K-Ra Peptide Product And Farnesyl Diphosphate Substrate Bound Simultaneously
authors S.B.Long, P.J.Casey, L.S.Beese
compound source
Molecule: Protein Farnesyltransferase Alpha Subunit
Chain: A
Synonym: Caax Farnesyltransferase Alpha Subunit, Ras Protei Prenyltransferase Alpha, Ftase-Alpha;
Ec: 2.5.1.21
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_atcc_number: 63134
Expression_system_vector_type: Baculovirus

Molecule: Protein Farnesyltransferase Beta Subunit
Chain: B
Synonym: Caax Farnesyltransferase Beta Subunit, Ras Protein Prenyltransferase Beta, Ftase-Beta;
Ec: 2.5.1.21
Engineered: Yes

Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_atcc_number: 63134
Expression_system_vector_type: Baculovirus

Molecule: Farnesylated K-Ras4b Peptide Product
Chain: C
Synonym: Transforming Protein P21b
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The Of The Peptide Is Naturally Found In Homo Sapiens.
symmetry Space Group: P 61
R_factor 0.159 R_Free 0.204
crystal
cell
length a length b length c angle alpha angle beta angle gamma
171.199 171.199 69.444 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand ACY, FAR, FPP, ZN enzyme Transferase E.C.2.5.1.21 BRENDA
related structures by homologous chain: 1JCS, 1O1T
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceReaction path of protein farnesyltransferase at atomic resolution., Long SB, Casey PJ, Beese LS, Nature 2002 Oct 10;419(6907):645-50. PMID:12374986
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk]
  • Biological Unit Coordinates (1kzo.pdb1.gz) 131 Kb
  • LPC: Ligand-Protein Contacts for 1KZO
  • CSU: Contacts of Structural Units for 1KZO
  • Likely Quarternary Molecular Structure file(s) for 1KZO
  • Structure Factors (421 Kb)
  • Retrieve 1KZO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KZO from S2C, [Save to disk]
  • Re-refined 1kzo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1KZO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KZO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1KZO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1kzoa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1kzob_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1kzo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kzo_C] [1kzo_A] [1kzo] [1kzo_B]
  • SWISS-PROT database: [Q04631] [Q02293] [P01116]
  • Domain organization of [FNTA_RAT] [FNTB_RAT] [RASK_HUMAN] by SWISSPFAM
  • Other resources with information on 1KZO
  • Community annotation for 1KZO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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