1L0A Signaling Protein date Feb 08, 2002
title Downstream Regulator Tank Binds To The Cd40 Recognition Site
authors C.Li, C.Z.Ni, M.L.Havert, E.Cabezas, J.He, D.Kaiser, J.C.Reed, A.C.Satterthwait, G.Cheng, K.R.Ely
compound source
Molecule: Tnf Receptor Associated Factor 3
Chain: A
Fragment: Residues 377-568
Synonym: Traf3, Cd40 Receptor Associated Factor 1, Craf1, C Binding Protein, Cd40bp;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Traf Family Member-Associated Nf-Kappa-B Activato
Chain: B
Fragment: Residues 178-195
Synonym: Tank, Traf-Interacting Protein, I-Traf
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 3 2 1
R_factor 0.230 R_Free 0.295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.000 83.000 76.700 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
related structures by homologous chain: 1FLK
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDownstream regulator TANK binds to the CD40 recognition site on TRAF3., Li C, Ni CZ, Havert ML, Cabezas E, He J, Kaiser D, Reed JC, Satterthwait AC, Cheng G, Ely KR, Structure (Camb) 2002 Mar;10(3):403-11. PMID:12005438
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (1l0a.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (1l0a.pdb2.gz) 102 Kb
  • CSU: Contacts of Structural Units for 1L0A
  • Likely Quarternary Molecular Structure file(s) for 1L0A
  • Structure Factors (58 Kb)
  • Retrieve 1L0A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1L0A from S2C, [Save to disk]
  • Re-refined 1l0a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1L0A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1L0A
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1L0A, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1l0aa2, region A:313-349 [Jmol] [rasmolscript] [script source]
        - Domain d1l0aa1, region A:350-504 [Jmol] [rasmolscript] [script source]
  • Fold representative 1l0a from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1l0a] [1l0a_B] [1l0a_A]
  • SWISS-PROT database: [Q92844] [Q13114]
  • Domain organization of [TANK_HUMAN] [TRAF3_HUMAN] by SWISSPFAM
  • Domain found in 1L0A: [MATH ] by SMART
  • Other resources with information on 1L0A
  • Community annotation for 1L0A at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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