1L0N native structure of bovine mitochondrial cytochrome bc1 complex date
authors Gao, X., Wen, X., Yu, C.A., Esser, L., Tsao, S., Quinn, B., Zhang, L., Yu, L., Xia, D.
compound source
symmetry
R_factor
R_Free 0.29736
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand FES, HEM enzyme
related structures by homologous chain: 1NTZ, 1SQB
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


E


F


G


H


I


J


K
  • ubiquinol-cytochrome-c reduc...


  • Primary referenceThe crystal structure of mitochondrial cytochrome bc1 in complex with famoxadone: the role of aromatic-aromatic interaction in inhibition., Gao X, Wen X, Yu C, Esser L, Tsao S, Quinn B, Zhang L, Yu L, Xia D, Biochemistry 2002 Oct 1;41(39):11692-702. PMID:12269811
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (345 Kb) [Save to disk]
  • Biological Unit Coordinates (1l0n.pdb1.gz) 333 Kb
  • Biological Unit Coordinates (1l0n.pdb2.gz) 660 Kb
  • LPC: Ligand-Protein Contacts for 1L0N
  • CSU: Contacts of Structural Units for 1L0N
  • Likely Quarternary Molecular Structure file(s) for 1L0N
  • Retrieve 1L0N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1L0N from S2C, [Save to disk]
  • View 1L0N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1L0N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1L0N, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1l0na1, region A:1-233 [Jmol] [rasmolscript] [script source]
        - Domain d1l0na2, region A:234-446 [Jmol] [rasmolscript] [script source]
        - Domain d1l0nb1, region B:17-235 [Jmol] [rasmolscript] [script source]
        - Domain d1l0nb2, region B:236-439 [Jmol] [rasmolscript] [script source]
        - Domain d1l0nc1, region C:261-379 [Jmol] [rasmolscript] [script source]
        - Domain d1l0nc2, region C:3-260 [Jmol] [rasmolscript] [script source]
        - Domain d1l0nd1, region D:1-195 [Jmol] [rasmolscript] [script source]
        - Domain d1l0nd2, region D:196-241 [Jmol] [rasmolscript] [script source]
        - Domain d1l0ne2, region E:1-69 [Jmol] [rasmolscript] [script source]
        - Domain d1l0ne1, region E:70-196 [Jmol] [rasmolscript] [script source]
        - Domain d1l0nf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1l0ng_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1l0nh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1l0ni_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1l0nj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1l0nk_, region K [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1l0n_C] [1l0n_B] [1l0n_I] [1l0n] [1l0n_F] [1l0n_E] [1l0n_A] [1l0n_J] [1l0n_G] [1l0n_D] [1l0n_K] [1l0n_H]
  • SWISS-PROT database: [P00125] [P00157] [P07552] [P31800] [P23004] [P00126] [P00129] [P13271] [P00130] [P13272]
  • Belongs to the proton-translocating quinol:cytochrome c reductase (qcr) superfamily according to TCDB.
  • Domain organization of [CY1_BOVIN] [CYB_BOVIN] [QCR10_BOVIN] [QCR1_BOVIN] [QCR2_BOVIN] [QCR6_BOVIN] [QCR7_BOVIN] [QCR8_BOVIN] [QCR9_BOVIN] [UCRI_BOVIN] by SWISSPFAM
  • Other resources with information on 1L0N
  • Community annotation for 1L0N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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