1L1S Structural Genomics, Unknown Function date Feb 19, 2002
title Structure Of Protein Of Unknown Function Mth1491 From Methan Thermoautotrophicum
authors D.Christendat, V.Saridakis, Y.Kim, P.A.Kumar, X.Xu, A.Semesi, A.Jo C.H.Arrowsmith, A.M.Edwards, Midwest Center For Structural Ge (Mcsg)
compound source
Molecule: Hypothetical Protein Mth1491
Chain: A
Engineered: Yes
 Organism_scientific: Methanothermobacter Thermautotrophicus
Organism_taxid: 145262
Gene: Orf1491
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 63
R_factor 0.202 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.440 82.440 37.040 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand MSE enzyme
Primary referenceThe crystal structure of hypothetical protein MTH1491 from Methanobacterium thermoautotrophicum., Christendat D, Saridakis V, Kim Y, Kumar PA, Xu X, Semesi A, Joachimiak A, Arrowsmith CH, Edwards AM, Protein Sci 2002 Jun;11(6):1409-14. PMID:12021439
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk]
  • Biological Unit Coordinates (1l1s.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 1L1S
  • CSU: Contacts of Structural Units for 1L1S
  • Likely Quarternary Molecular Structure file(s) for 1L1S
  • Retrieve 1L1S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1L1S from S2C, [Save to disk]
    • View 1L1S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1L1S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1L1S, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1l1sa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1l1s] [1l1s_A]
  • SWISS-PROT database: [O27535]
  • Domain organization of [O27535_METTH] by SWISSPFAM
    • Other resources with information on 1L1S
  • Community annotation for 1L1S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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