1L2G	Viral Protein	date	Feb 21, 2002
title	Structure Of A C-Terminally Truncated Form Of Glycoprotein D
authors	A.Carfi, S.H.Willis, J.C.Whitbeck, C.Krummenacher, G.H.Cohen, R.J.Eisenberg, D.C.Wiley
compound		source
Molecule: Glycoprotein D Chain: A, B, D, C Fragment: Ectodomain Engineered: Yes		Organism_scientific: Human Herpesvirus 1 Organism_common: Herpes Simplex Virus Type 1 Organism_taxid: 10298 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_strain: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac-Dual
symmetry	Space Group: P 4	R_factor 0.278 R_Free 0.297
crystal cell	length a length b length c angle alpha angle beta angle gamma 131.416 131.416 83.265 90.00 90.00 90.00
method	X-Ray Diffraction, 2 Models	resolution	2.85 Å
ligand	NAG	enzyme
related structures	by homologous chain: 1JMA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Herpes simplex virus glycoprotein D bound to the human receptor HveA., Carfi A, Willis SH, Whitbeck JC, Krummenacher C, Cohen GH, Eisenberg RJ, Wiley DC, Mol Cell 2001 Jul;8(1):169-79. PMID:11511370

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (312 Kb) [Save to disk] Biological Unit Coordinates (1l2g.pdb1.gz) 79 Kb Biological Unit Coordinates (1l2g.pdb2.gz) 78 Kb Biological Unit Coordinates (1l2g.pdb3.gz) 304 Kb Biological Unit Coordinates (1l2g.pdb4.gz) 303 Kb LPC: Ligand-Protein Contacts for 1L2G CSU: Contacts of Structural Units for 1L2G Likely Quarternary Molecular Structure file(s) for 1L2G Structure Factors (255 Kb) Retrieve 1L2G in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1L2G from S2C, [Save to disk]

View 1L2G in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1L2G

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1L2G, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1l2ga_, region A [Jmol] [rasmolscript] [script source]     - Domain d1l2gb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1l2gc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1l2gd_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1l2g_C] [1l2g_B] [1l2g] [1l2g_D] [1l2g_A] SWISS-PROT database: [P57083] Domain organization of [GD_HHV1P] by SWISSPFAM

Other resources with information on 1L2G

Community annotation for 1L2G at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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