1L2L Crystal structure of ADP-dependent glucokinase from a Pyrococcus Horikoshii date
authors Tsuge, H., Sakuraba, H., Katunuma, N., Ohshima, T.
compound source
R_Free 0.277
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
related structures by homologous chain: 1UA4
  • glucokinase activity

  • Primary referenceCrystal structure of the ADP-dependent glucokinase from Pyrococcus horikoshii at 2.0-A resolution: a large conformational change in ADP-dependent glucokinase., Tsuge H, Sakuraba H, Kobe T, Kujime A, Katunuma N, Ohshima T, Protein Sci 2002 Oct;11(10):2456-63. PMID:12237466
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (1l2l.pdb1.gz) 79 Kb
  • CSU: Contacts of Structural Units for 1L2L
  • Likely Quarternary Molecular Structure file(s) for 1L2L
  • Retrieve 1L2L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1L2L from S2C, [Save to disk]
  • View 1L2L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1L2L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1L2L, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1l2la_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1l2l] [1l2l_A]
  • SWISS-PROT database: [O58328]
  • Domain organization of [GLKA_PYRHO] by SWISSPFAM
  • Other resources with information on 1L2L
  • Community annotation for 1L2L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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