1L3K Rna Binding Protein date Feb 27, 2002
title Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
authors J.Vitali, J.Ding, J.Jiang, Y.Zhang, A.R.Krainer, R.M.Xu
compound source
Molecule: Heterogeneous Nuclear Ribonucleoprotein A1
Chain: A
Fragment: Rna-Recognition Motif Domain
Synonym: Hnrnp A1, Up1, Helix-Destabilizing Protein, Single Binding Protein, Hnrnp Core Protein A1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.710 43.450 55.060 90.00 93.70 90.00
method X-Ray Diffractionresolution 1.10 Å
related structures by homologous chain: 1HA1
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCorrelated alternative side chain conformations in the RNA-recognition motif of heterogeneous nuclear ribonucleoprotein A1., Vitali J, Ding J, Jiang J, Zhang Y, Krainer AR, Xu RM, Nucleic Acids Res 2002 Apr 1;30(7):1531-8. PMID:11917013
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (1l3k.pdb1.gz) 64 Kb
  • CSU: Contacts of Structural Units for 1L3K
  • Likely Quarternary Molecular Structure file(s) for 1L3K
  • Structure Factors (609 Kb)
  • Retrieve 1L3K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1L3K from S2C, [Save to disk]
  • Re-refined 1l3k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1L3K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1L3K
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1L3K, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1l3ka2, region A:103-181 [Jmol] [rasmolscript] [script source]
        - Domain d1l3ka1, region A:8-91 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1l3k] [1l3k_A]
  • SWISS-PROT database: [P09651]
  • Domain organization of [ROA1_HUMAN] by SWISSPFAM
  • Domain found in 1L3K: [RRM ] by SMART
  • Other resources with information on 1L3K
  • Community annotation for 1L3K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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